#Fiji imagej install

#Fiji imagej install

Install and configure Imarisĭownload and install Imaris 9.9 from the customer portal ( ) Restart Fiji and ensure that Labkit is present in the Plugins Menu: This will download some files and display a progress for a few minutes.įiji then displays a message that the update was successful: In the same dialog, press the “Add update site” at the bottom.Įnter a new site with name imaris-labkit (second column) and url (third column), and check it (first column).Ĭlick Close to close the “Manage Update Sites” dialog.īack in the “ImageJ updater” dialog, click Apply changes. It is therefore recommended to use clij and clij2. Labkit segmentation also works without clij and clij2, but it is then much slower. This will add support for GPU accelerated labkit segmentation. Press the “Manage update sites” button to open the “Manage update sites” dialog. This will show the ”ImageJ Updater” Dialog. Restart Fiji and again click “Help / Update”. This will perform some updates and ask you to restart Fiji.

Open Fiji: C:/fiji_win64/Fiji.app/ImageJ-win64.exe Labkit is a Fiji plugin that needs to be activated after the installation of Fiji. We will use C:/fiji_win64 in this article. You don’t need to run an installer, just download and extract the zip file to a folder. Fiji is distributed as a portable application. Install Fiji and configure Labkitĭownload and install Fiji from. Configuration in Fiji as well as in Imaris is required. This article explains the steps required to configure Imaris 9.9 to work with Labkit. In Imaris 9.9 it is possible to use machine learning pixel classification using the Fiji/ImageJ Plugin called “Labkit” ( ). Configuring Imaris 9.9 to work with Labkit